| Protein ZmLBD29 | |
|---|---|
|
ZmLBD29 is a protein in the LBD family.
|
|
| Information | |
| TF Name: | ZmLBD29 |
| Species: | Maize |
| TF Family: | LBD |
| Gene Name(Synonym): | LBD29 |
| Uniprot ID: | K7VBT3 |
Protein ZmLBD29
ZmLBD29 is a protein in the LBD family.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF03195 | |
| Zm00001eb269620_T001 |  |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d036032 | DAPseq |  |
sequence | fimo | position |
| Zm00001d036032 | DAPseq |  |
sequence | fimo | position |
| Zm00001d036032 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d036032 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmLBD29 is the regulator
Interactions where ZmLBD29 is the target
Expand
Zm00001eb269620_T001 from maize genome v5
Amino Acid Sequence
Copy to clipboard
MRGRVDNQIEAATELAAGSGQPCAETTLPTSRSTMPPVAQEGAPTWSLSPGSGAASSASASSNPSSSLSLPPPVPTSSSA
PSSSSPPPSPPPSPTSPCAACKHQRRRCLPDCLLKPYFPADEPDMFKNALRMFGVRKLQHMVRSVRPERRDACARAIALE
SKSRAEDPVRGCSGVIQDLEEQLMDTAVELEVLLRRLDSYRHARDSLPQRPPNPHDAGAAADYSPATLQ
MRGRVDNQIEAATELAAGSGQPCAETTLPTSRSTMPPVAQEGAPTWSLSPGSGAASSASASSNPSSSLSLPPPVPTSSSA
PSSSSPPPSPPPSPTSPCAACKHQRRRCLPDCLLKPYFPADEPDMFKNALRMFGVRKLQHMVRSVRPERRDACARAIALE
SKSRAEDPVRGCSGVIQDLEEQLMDTAVELEVLLRRLDSYRHARDSLPQRPPNPHDAGAAADYSPATLQ
MRGRVDNQIEAATELAAGSGQPCAETTLPTSRSTMPPVAQEGAPTWSLSPGSGAASSASASSNPSSSLSLPPPVPTSSSA
PSSSSPPPSPPPSPTSPCAACKHQRRRCLPDCLLKPYFPADEPDMFKNALRMFGVRKLQHMVRSVRPERRDACARAIALE
SKSRAEDPVRGCSGVIQDLEEQLMDTAVELEVLLRRLDSYRHARDSLPQRPPNPHDAGAAADYSPATLQ
MRGRVDNQIEAATELAAGSGQPCAETTLPTSRSTMPPVAQEGAPTWSLSPGSGAASSASASSNPSSSLSLPPPVPTSSSA
PSSSSPPPSPPPSPTSPCAACKHQRRRCLPDCLLKPYFPADEPDMFKNALRMFGVRKLQHMVRSVRPERRDACARAIALE
SKSRAEDPVRGCSGVIQDLEEQLMDTAVELEVLLRRLDSYRHARDSLPQRPPNPHDAGAAADYSPATLQ
MRGRVDNQIEAATELAAGSGQPCAETTLPTSRSTMPPVAQEGAPTWSLSPGSGAASSASASSNPSSSLSLPPPVPTSSSA
PSSSSPPPSPPPSPTSPCAACKHQRRRCLPDCLLKPYFPADEPDMFKNALRMFGVRKLQHMVRSVRPERRDACARAIALE
SKSRAEDPVRGCSGVIQDLEEQLMDTAVELEVLLRRLDSYRHARDSLPQRPPNPHDAGAAADYSPATLQ
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF03195 |
|
| Hover here to show all domains | |
Nucleotide Sequence
Copy to clipboard
Expand
TTTATTATTTGGATAACAGATTCAT...
TTTATTATTTGGATAACAGATTCATCTCCAGCCAGCCACAAGAACGCCAAGCTTCTTTATTTACCCTCGCGATCACGGTGACCCACGCCACCTCGAGATTCATTCAACCGCCCGGTACACAGCGGGTTCGCAAATGCGCGGACGCGTAGACAACCAGATCGAGGCAGCCACGGAGCTCGCGGCGGGCAGCGGCCAGCCGTGCGCAGAAACCACACTGCCGACCTCACGGAGCACCATGCCACCGGTGGCGCAAGAAGGAGCGCCGACGTGGTCGTTGTCACCTGGCAGCGGCGCGGCTTCGTCAGCATCCGCCTCTTCCAACCCGTCCTCCTCGCTCTCGCTCCCGCCCCCGGTCCCTACCAGCAGCAGCGCGCCGTCGTCCTCATCACCCCCGCCGTCGCCGCCACCGTCGCCTACCTCGCCGTGCGCCGCGTGCAAGCACCAGCGGCGCAGGTGCCTGCCGGACTGCCTCCTGAAGCCCTACTTCCCGGCCGACGAGCCCGACATGTTCAAGAACGCGCTTCGGATGTTCGGCGTCAGGAAACTGCAGCACATGGTCCGGTCAGTCCGACCAGAGAGGCGGGACGCGTGCGCGCGCGCCATCGCCTTGGAGTCCAAGTCGCGCGCGGAGGACCCCGTGCGCGGCTGCAGCGGTGTGATCCAGGACCTGGAGGAGCAGCTCATGGACACGGCCGTCGAGCTCGAGGTGCTGCTGCGGCGGCTGGACTCGTACCGGCACGCGCGCGACTCGTTGCCCCAGCGTCCACCGAACCCTCATGACGCTGGCGCGGCCGCGGACTATTCCCCGGCGACGCTGCAGTAGTTTATGGGAACGTCGCGCGGCGGCGGCGTGCAGCAGCAAGCCCCGTACGGCGTGCCACCGGCGGCGTACGATTACGAGCTCGCTGGGATACAGCAACAGTTATCCCCGATGGAGCCACAATTGCCGGAAGTGCCGTAGCCACACGCTCCACGAGGCGGCCATAACTCGATCCGGTCGGTGCAACTGCAACCGCATGTCTCCGGGGCGCAGGCAAGCTCTCAGCGATACAACGACGACCCGGCGGGCGGCACTGCGTCGGCAAATGGATCTGGCCTCGTCGGCGACGTCATCCTCCAATATGCTGATGACACTATTATTTTCTTAGATGATAATATCGAAGGAG
GRMZM2G386095_T01 from maize genome v3
Amino Acid Sequence
Copy to clipboard
MPPVAQEGAPTWSLSPGSGAASSASASSNPSSSLSLPPPVPTSSSAPSSSSPPPSPPPSPTSPCAACKHQRRRCLPDCLL
KPYFPADEPDMFKNALRMFGVRKLQHMVRSVRPERRDACARAIALESKSRAEDPVRGCSGVIQDLEEQLMDTAVELEVLL
RRLDSYRHARDSLPQRPPNPHDAGAAADYSPATLQ
Nucleotide Sequence
Copy to clipboard
Expand
ATGCCACCGGTGGCGCAAGAAGGAG...
ATGCCACCGGTGGCGCAAGAAGGAGCGCCGACGTGGTCGTTGTCACCTGGCAGCGGCGCGGCTTCGTCAGCATCCGCCTCTTCCAACCCGTCCTCCTCGCTCTCGCTCCCGCCCCCGGTCCCTACCAGCAGCAGCGCGCCGTCGTCCTCATCACCCCCGCCGTCGCCGCCACCGTCGCCTACCTCGCCGTGCGCCGCGTGCAAGCACCAGCGGCGCAGGTGCCTGCCGGACTGCCTCCTGAAGCCCTACTTCCCGGCCGACGAGCCCGACATGTTCAAGAACGCGCTTCGGATGTTCGGCGTCAGGAAACTGCAGCACATGGTCCGGTCAGTCCGACCAGAGAGGCGGGACGCGTGCGCGCGCGCCATCGCCTTGGAGTCCAAGTCGCGCGCGGAGGACCCCGTGCGCGGCTGCAGCGGTGTGATCCAGGACCTGGAGGAGCAGCTCATGGACACGGCCGTCGAGCTCGAGGTGCTGCTGCGGCGGCTGGACTCGTACCGGCACGCGCGCGACTCGTTGCCCCAGCGTCCACCGAACCCTCATGACGCTGGCGCGGCCGCGGACTATTCCCCGGCGACGCTGCAGTAGTTTATGGGAACGTCGCGCGGCGGCGGCGTGCAGCAGCAAGCCCCGTACGGCGTGCCACCGGCGGCGTACGATTACGAGCTCGCTGGGATACAGCAACAGTTATCCCCGATGGAGCCACAATTGCCGGAAGTGCCGTAGCCA
Zm00001d036032_T001 from maize genome v4
Amino Acid Sequence
Copy to clipboard
MPPVAQEGAPTWSLSPGSGAASSASASSNPSSSLSLPPPVPTSSSAPSSSSPPPSPPPSPTSPCAACKHQRRRCLPDCLL
KPYFPADEPDMFKNALRMFGVRKLQHMVRSVRPERRDACARAIALESKSRAEDPVRGCSGVIQDLEEQLMDTAVELEVLL
RRLDSYRHARDSLPQRPPNPHDAGAAADYSPATLQ
Nucleotide Sequence
Copy to clipboard
Expand
ATGCCACCGGTGGCGCAAGAAGGAG...
ATGCCACCGGTGGCGCAAGAAGGAGCGCCGACGTGGTCGTTGTCACCTGGCAGCGGCGCGGCTTCGTCAGCATCCGCCTCTTCCAACCCGTCCTCCTCGCTCTCGCTCCCGCCCCCGGTCCCTACCAGCAGCAGCGCGCCGTCGTCCTCATCACCCCCGCCGTCGCCGCCACCGTCGCCTACCTCGCCGTGCGCCGCGTGCAAGCACCAGCGGCGCAGGTGCCTGCCGGACTGCCTCCTGAAGCCCTACTTCCCGGCCGACGAGCCCGACATGTTCAAGAACGCGCTTCGGATGTTCGGCGTCAGGAAACTGCAGCACATGGTCCGGTCAGTCCGACCAGAGAGGCGGGACGCGTGCGCGCGCGCCATCGCCTTGGAGTCCAAGTCGCGCGCGGAGGACCCCGTGCGCGGCTGCAGCGGTGTGATCCAGGACCTGGAGGAGCAGCTCATGGACACGGCCGTCGAGCTCGAGGTGCTGCTGCGGCGGCTGGACTCGTACCGGCACGCGCGCGACTCGTTGCCCCAGCGTCCACCGAACCCTCATGACGCTGGCGCGGCCGCGGACTATTCCCCGGCGACGCTGCAGTAG
Copyright © 2023 Grassius.org | Last updated: 2023-06-26